PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G172000.1
Common NameB456_011G172000, LOC105776020
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 176aa    MW: 19688 Da    PI: 8.1047
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G172000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000143456123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C+ C++ F++   L  H++ H
  Gorai.011G172000.1 34 YECTFCKRGFTNAQALGGHMNIH 56
                        99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.9E-62360IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.53E-73060No hitNo description
PROSITE profilePS5015711.4683461IPR007087Zinc finger, C2H2
SMARTSM003550.00973456IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803656IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MESAGKRGSS DASSEENEDD QVKCHTGATT KRSYECTFCK RGFTNAQALG GHMNIHRKDR  60
AKAKQPTSSA VLSMNPRYAP TIPTYEPSRH HPIVEAQTQT NHHMYFKPPL SSPRLPYAPA  120
RSPSLSINEE LLNANFSLQI DPTKVDENEM TRKGIMKEGE VDLELRLGHD PYRYN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6183635e-31JX618363.1 Gossypium hirsutum clone NBRI_GE63805 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012453938.11e-131PREDICTED: transcriptional regulator TAC1
TrEMBLA0A0D2UUB91e-131A0A0D2UUB9_G
STRINGPOPTR_0008s16410.13e-43(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91682435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.14e-17C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]